Transcriptomics:
RNA-seq
Interactomes:
ChIP-seq: Chromosome Immunoprecipitation then directly to sequencing
CLIP-seq: Cross Linking Immunoprecipitation, like ChIP-seq but with RNA
3C, 4C and 5C: Chromosome Configuration Capture (3C) (Circularized, 4C), etc.
ChIA-PET: Chromosome Interactions through Paired End Tag sequences.
E-MAPS: epistatic miniarray profiles
Epigenomics:
Reduced representation bisulfite sequencing.
MeDIP-seq: like ChIP-seq but with antibodies to methylated DNA.
MethylC-seq: shotgun sequencing of bisulfite-coverted DNA
And there is and will be more, more, more...